1. Match to: FJ965538 FJ965538.1 Streptococcus phage 5093, complete genome(FJ965538) position: 1576-1605, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.13 position: 866-895, Strand: +
Score: 35 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGT)
+ 5' UGUACAACAACACAGCAAGACAAGAGGAUGAUGCUAUGGUUUUUGU 3' - <- CRISPR spacer RNA | |||||||||||||||||||||||||||||| - 3' GTTAAATTTTGTGTCGTTCTGTTCTCCTACTACGATACTGTCTTTG 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CAATTTAAAACACAGCAAGACAAGAGGATGATGCTATGACAGAAAC 3' - <- [Entrez Nucleotide] |
Score: 35 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGT)
2. Match to: FJ965538 FJ965538.1 Streptococcus phage 5093, complete genome(FJ965538) position: 31781-31810, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.24 position: 1591-1620, Strand: +
Score: 35 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTTC)
+ 5' UGUACAACAAUCAAUACGACAAGAGUUAAAAUGGUCUUGUUUUUGU 3' - <- CRISPR spacer RNA | | ||||||||||||||||||||||||||||||| - 3' CTTTACTTTTAGTTATGCTGTTCTCAATTTTACCAGAACTTCTTAC 5' + <- Protospacer Sequence |||||||| |||||||| + 5' GAAATGAAAATCAATACGACAAGAGTTAAAATGGTCTTGAAGAATG 3' - <- [Entrez Nucleotide] |
Score: 35 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTTC)
3. Match to: AF145054 AF145054.1 Streptococcus thermophilus bacteriophage 7201, complete genome(AF145054) position: 5338-5367, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.19 position: 1261-1290, Strand: +
Score: 35 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTCC)
+ 5' UGUACAACAUAAACUAUGAAAUUUUAUAAUUUUUAAGAGUUUUUGU 3' - <- CRISPR spacer RNA || ||||||||||||||||||||||||||||||| - 3' TATTGAAATATTTGATACTTTAAAATATTAAAAATTCTCCTCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ATAACTTTATAAACTATGAAATTTTATAATTTTTAAGAGGAGAAAA 3' - <- [Entrez Nucleotide] |
Score: 35 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTCC)
4. Match to: AF145054 AF145054.1 Streptococcus thermophilus bacteriophage 7201, complete genome(AF145054) position: 17818-17847, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.25 position: 1657-1686, Strand: +
Score: 35 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTAC)
+ 5' UGUACAACGCUUAGCUGUCCAAUCCACGAACGUGGAUGGUUUUUGU 3' - <- CRISPR spacer RNA | | |||||||||||||||||||||||||||||||| - 3' CCGACTGCCGAATCGACAGGTTAGGTGCTTGCACCTACCATCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' GGCTGACGGCTTAGCTGTCCAATCCACGAACGTGGATGGTAGAAAA 3' - <- [Entrez Nucleotide] |
Score: 35 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTAC)
5. Match to: AY196178 AY196178.1 Streptococcus thermophilus bacteriophage kappa3 putative primase (Pri3.1) gene, complete cds(AY196178) position: 1172-1200, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.14 position: 932-960, Strand: +
Score: 34 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
+ 5' UGUACAACCGACACAAGAACGUAUGCAAGAGUUCAAGGUUUUUGU 3' - <- CRISPR spacer RNA | || |||||||||||||||||||||||||||||| - 3' TGGTTTTCGCTGTGTTCTTGCATACGTTCTCAAGTTCCTTCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ACCAAAAGCGACACAAGAACGTATGCAAGAGTTCAAGGAAGAAAA 3' - <- [Entrez Nucleotide] |
Score: 34 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
6. Match to: AF085222 AF085222.2 Streptococcus thermophilus bacteriophage DT1, complete genome(AF085222) position: 29715-29743, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.14 position: 932-960, Strand: +
Score: 34 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
+ 5' UGUACAACCGACACAAGAACGUAUGCAAGAGUUCAAGGUUUUUGU 3' - <- CRISPR spacer RNA | || |||||||||||||||||||||||||||||| - 3' TGGTTTTCGCTGTGTTCTTGCATACGTTCTCAAGTTCCTTCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ACCAAAAGCGACACAAGAACGTATGCAAGAGTTCAAGGAAGAAAA 3' - <- [Entrez Nucleotide] |
Score: 34 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
7. Match to: AF020798 AF020798.1
Streptococcus thermophilus bacteriophage lysogeny module, integrase
homolog (int), putative host cell surface-exposed lipoprotein, putative
metallo-proteinase, repressor, Cro-like regulatory protein, and
P1-antirepressor homolog genes, complete cds(AF020798) position: 2162-2191, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.24 position: 1591-1620, Strand: +
Score: 33 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTTC)
+ 5' UGUACAACAAUCAAUACGACAAGAGUUAAAAUGGUCUUGUUUUUGU 3' - <- CRISPR spacer RNA | | |||||||||||||||| |||||||||||||| - 3' CTTTACTTTTAGTTATGCTGTTCTTAATTTTACCAGAACTTCTTAC 5' + <- Protospacer Sequence |||||||| |||||||| + 5' GAAATGAAAATCAATACGACAAGAATTAAAATGGTCTTGAAGAATG 3' - <- [Entrez Nucleotide] |
Score: 33 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTTC)
8. Match to: FJ236310 FJ236310.1 Streptococcus phage Abc2, complete genome(FJ236310) position: 20441-20470, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.2 position: 140-169, Strand: +
Score: 33 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTTG)
+ 5' UGUACAACAAUGACGAGGAGCUAUUGGCACAACUUACAGUUUUUGU 3' - <- CRISPR spacer RNA ||||||||||||||||||||| |||||||| - 3' TATACCAATTACTGCTCCTCGATAACCGTTTTGAATGTGTTCTTAT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ATATGGTTAATGACGAGGAGCTATTGGCAAAACTTACACAAGAATA 3' - <- [Entrez Nucleotide] |
Score: 33 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTTG)
9. Match to: FJ226752 FJ226752.1 Streptococcus phage ALQ13.2, complete genome(FJ226752) position: 21534-21563, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.2 position: 140-169, Strand: +
Score: 33 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTTG)
+ 5' UGUACAACAAUGACGAGGAGCUAUUGGCACAACUUACAGUUUUUGU 3' - <- CRISPR spacer RNA ||||||||||||||||||||| |||||||| - 3' TATACCAATTACTGCTCCTCGATAACCGTTTTGAATGTGTTCTTAT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ATATGGTTAATGACGAGGAGCTATTGGCAAAACTTACACAAGAATA 3' - <- [Entrez Nucleotide] |
Score: 33 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTTG)
10. Match to: AF115103 AF115103.1 Streptococcus thermophilus bacteriophage Sfi21, complete genome(AF115103) position: 19154-19182, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.28 position: 1855-1884, Strand: +
Score: 33 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGT)
+ 5' UGUACAACUAAUGCUACAUCUCAAAGGAUGAUCCCAGAGUUUUUGU 3' - <- CRISPR spacer RNA | ||||||||||||||||||||||||||||| | - 3' TGTCTACGGTTACGATGTAGAGTTTCCTACTAGGGTCTTGTCTTTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ACAGATGCCAATGCTACATCTCAAAGGATGATCCCAGAACAGAAAT 3' - <- [Entrez Nucleotide] |
Score: 33 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGT)
11. Match to: AF115102 AF115102.1 Streptococcus thermophilus bacteriophage Sfi19, complete genome(AF115102) position: 20982-21010, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.28 position: 1855-1884, Strand: +
Score: 33 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGT)
+ 5' UGUACAACUAAUGCUACAUCUCAAAGGAUGAUCCCAGAGUUUUUGU 3' - <- CRISPR spacer RNA | ||||||||||||||||||||||||||||| | - 3' TGTCTACGGTTACGATGTAGAGTTTCCTACTAGGGTCTTGTCTTTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ACAGATGCCAATGCTACATCTCAAAGGATGATCCCAGAACAGAAAT 3' - <- [Entrez Nucleotide] |
Score: 33 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGT)
12. Match to: U88974 U88974.1 Streptococcus thermophilus temperate bacteriophage O1205, complete genome(U88974) position: 8531-8559, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.14 position: 932-960, Strand: +
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
+ 5' UGUACAACCGACACAAGAACGUAUGCAAGAGUUCAAGGUUUUUGU 3' - <- CRISPR spacer RNA | || |||||||||||||||||||||| ||||||| - 3' TGGTTTTCGCTGTGTTCTTGCATACGTTCTTAAGTTCCTTCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ACCAAAAGCGACACAAGAACGTATGCAAGAATTCAAGGAAGAAAA 3' - <- [Entrez Nucleotide] |
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
13. Match to: FJ226752 FJ226752.1 Streptococcus phage ALQ13.2, complete genome(FJ226752) position: 31961-31989, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.14 position: 932-960, Strand: +
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
+ 5' UGUACAACCGACACAAGAACGUAUGCAAGAGUUCAAGGUUUUUGU 3' - <- CRISPR spacer RNA | || || ||||||||||||||||||||||||||| - 3' TGGTTTTCGCCGTGTTCTTGCATACGTTCTCAAGTTCCTTCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ACCAAAAGCGGCACAAGAACGTATGCAAGAGTTCAAGGAAGAAAA 3' - <- [Entrez Nucleotide] |
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
14. Match to: AF158601 AF158601.1
Streptococcus thermophilus bacteriophage SFi18 lysin, gp111, gp183,
gp47, gp54, gp71, gp145, gp69, gp40, gp229, gp157, gp233, putative
helicase, gp151, gp271, putative primase, gp143, gp106, gp89, gp57,
gp51, gp66, gp192, putative DNA binding protein, gp99, and gp235 genes,
complete cds(AF158601) position: 10013-10041, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.14 position: 932-960, Strand: +
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
+ 5' UGUACAACCGACACAAGAACGUAUGCAAGAGUUCAAGGUUUUUGU 3' - <- CRISPR spacer RNA | || |||||||||||||||||||||| ||||||| - 3' TGGTTTTCGCTGTGTTCTTGCATACGTTCTTAAGTTCCTTCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ACCAAAAGCGACACAAGAACGTATGCAAGAATTCAAGGAAGAAAA 3' - <- [Entrez Nucleotide] |
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
15. Match to: AF077306 AF077306.1
Streptococcus thermophilus bacteriophage Sfi19 gp157, gp233, putative
helicase , gp151, gp271, putative primase, and gp143 genes, complete cds(AF077306) position: 4916-4944, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.14 position: 932-960, Strand: +
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
+ 5' UGUACAACCGACACAAGAACGUAUGCAAGAGUUCAAGGUUUUUGU 3' - <- CRISPR spacer RNA | || |||||||||||||||||||||| ||||||| - 3' TGGTTTTCGCTGTGTTCTTGCATACGTTCTTAAGTTCCTTCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ACCAAAAGCGACACAAGAACGTATGCAAGAATTCAAGGAAGAAAA 3' - <- [Entrez Nucleotide] |
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
16. Match to: AF158600 AF158600.2 Streptococcus thermophilus bacteriophage Sfi11, complete genome(AF158600) position: 34939-34967, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.14 position: 932-960, Strand: +
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
+ 5' UGUACAACCGACACAAGAACGUAUGCAAGAGUUCAAGGUUUUUGU 3' - <- CRISPR spacer RNA | || |||||||||||||||||||||| ||||||| - 3' TGGTTTTCGCTGTGTTCTTGCATACGTTCTTAAGTTCCTTCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ACCAAAAGCGACACAAGAACGTATGCAAGAATTCAAGGAAGAAAA 3' - <- [Entrez Nucleotide] |
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
17. Match to: AF004379 AF004379.1 Streptococcus thermophilus bacteriophage Sfi21 DNA replication module(AF004379) position: 4929-4957, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.14 position: 932-960, Strand: +
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
+ 5' UGUACAACCGACACAAGAACGUAUGCAAGAGUUCAAGGUUUUUGU 3' - <- CRISPR spacer RNA | || |||||||||||||||||||||| ||||||| - 3' TGGTTTTCGCTGTGTTCTTGCATACGTTCTTAAGTTCCTTCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ACCAAAAGCGACACAAGAACGTATGCAAGAATTCAAGGAAGAAAA 3' - <- [Entrez Nucleotide] |
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
18. Match to: AF115103 AF115103.1 Streptococcus thermophilus bacteriophage Sfi21, complete genome(AF115103) position: 34172-34200, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.14 position: 932-960, Strand: +
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
+ 5' UGUACAACCGACACAAGAACGUAUGCAAGAGUUCAAGGUUUUUGU 3' - <- CRISPR spacer RNA | || |||||||||||||||||||||| ||||||| - 3' TGGTTTTCGCTGTGTTCTTGCATACGTTCTTAAGTTCCTTCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ACCAAAAGCGACACAAGAACGTATGCAAGAATTCAAGGAAGAAAA 3' - <- [Entrez Nucleotide] |
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
19. Match to: AF115102 AF115102.1 Streptococcus thermophilus bacteriophage Sfi19, complete genome(AF115102) position: 32944-32972, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.14 position: 932-960, Strand: +
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
+ 5' UGUACAACCGACACAAGAACGUAUGCAAGAGUUCAAGGUUUUUGU 3' - <- CRISPR spacer RNA | || |||||||||||||||||||||| ||||||| - 3' TGGTTTTCGCTGTGTTCTTGCATACGTTCTTAAGTTCCTTCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ACCAAAAGCGACACAAGAACGTATGCAAGAATTCAAGGAAGAAAA 3' - <- [Entrez Nucleotide] |
Score: 32 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
20. Match to: AF115103 AF115103.1 Streptococcus thermophilus bacteriophage Sfi21, complete genome(AF115103) position: 9524-9553, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.32 position: 2119-2148, Strand: -
Score: 31 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTCT)
+ 5' UGUACAACACCAUUAGCAAUCAUUUGUGCCCAUUGAGUGUUUUUGU 3' - <- CRISPR spacer RNA || || |||||| ||||||||||| ||||||||||| | - 3' ACCTGAAATGGTAACCGTTAGTAAACTCGGGTAACTCATCTCTTTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TGGACTTTACCATTGGCAATCATTTGAGCCCATTGAGTAGAGAAAT 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 31 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTCT)
21. Match to: AF115102 AF115102.1 Streptococcus thermophilus bacteriophage Sfi19, complete genome(AF115102) position: 11109-11138, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.32 position: 2119-2148, Strand: -
Score: 31 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTCT)
+ 5' UGUACAACACCAUUAGCAAUCAUUUGUGCCCAUUGAGUGUUUUUGU 3' - <- CRISPR spacer RNA || || |||||| ||||||||||| ||||||||||| | - 3' ACCTGAAATGGTAACCGTTAGTAAACTCGGGTAACTCATCTCTTTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TGGACTTTACCATTGGCAATCATTTGAGCCCATTGAGTAGAGAAAT 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 31 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTCT)
22. Match to: U88974 U88974.1 Streptococcus thermophilus temperate bacteriophage O1205, complete genome(U88974) position: 23000-23029, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.10 position: 668-697, Strand: +
Score: 31 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTT)
+ 5' UGUACAACGAGCGAGCUCGAAAUAAUCUUAAUUACAAGGUUUUUGU 3' - <- CRISPR spacer RNA || ||||||||||||||||||||||| ||| - 3' TTGACAATCTTGCTCGAGCTTTATTAGAATTAATATTCTTTCTTTC 5' + <- Protospacer Sequence |||||||| |||||||| + 5' AACTGTTAGAACGAGCTCGAAATAATCTTAATTATAAGAAAGAAAG 3' - <- [Entrez Nucleotide] |
Score: 31 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTT)
23. Match to: AF115102 AF115102.1 Streptococcus thermophilus bacteriophage Sfi19, complete genome(AF115102) position: 8076-8105, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.25 position: 1657-1686, Strand: +
Score: 31 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGC)
+ 5' UGUACAACGCUUAGCUGUCCAAUCCACGAACGUGGAUGGUUUUUGU 3' - <- CRISPR spacer RNA | | |||||||||||||||||||||||| ||||| - 3' CCGACTGCCGAATCGACAGGTTAGGTGCTTGCGACTACCGTCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' GGCTGACGGCTTAGCTGTCCAATCCACGAACGCTGATGGCAGAAAA 3' - <- [Entrez Nucleotide] |
Score: 31 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGC)
24. Match to: AF085222 AF085222.2 Streptococcus thermophilus bacteriophage DT1, complete genome(AF085222) position: 1000-1029, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.7 position: 470-499, Strand: +
Score: 29 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGC)
+ 5' UGUACAACGCUGGCGAGGAAACGAACAAGGCCUCAACAGUUUUUGU 3' - <- CRISPR spacer RNA || | | || ||||||||||| |||||||| ||||||| | - 3' ACCTTTAACGTCCGCTCCTTTGTTTGTTCCGAAGTTGTCGTCTTTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TGGAAATTGCAGGCGAGGAAACAAACAAGGCTTCAACAGCAGAAAT 3' - <- [Entrez Nucleotide] |
Score: 29 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGC)
25. Match to: AF115103 AF115103.1 Streptococcus thermophilus bacteriophage Sfi21, complete genome(AF115103) position: 38304-38331, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.1 position: 74-103, Strand: +
Score: 29 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTAA)
+ 5' UGUACAACUGUUUGACAGCAAAUCAAGAUUCGAAUUGUGUUUUUGU 3' - <- CRISPR spacer RNA | | |||||||| ||| ||||||||||||||| | - 3' GTTGCCTAATAAACTGTCATTTTGTTCTAAGCTTAACAAATCTTTG 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CAACGGATTATTTGACAGTAAAACAAGATTCGAATTGTTTAGAAAC 3' - <- [Entrez Nucleotide] |
Score: 29 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTAA)
26. Match to: AF112470 AF112470.1 Streptococcus thermophilus bacteriophage Sfi21 structural gene cluster, complete sequence(AF112470) position: 6227-6256, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.18 position: 1195-1224, Strand: -
Score: 28
+ 5' UGUACAACGCAGUAUCAGCAAGCAAGCUGUUAGUUACUGUUUUUGU 3' - <- CRISPR spacer RNA ||| |||| |||||||||||||||||||||||||||| | - 3' ACAAAAGTCGTCTTAGTCGTTCGTTCGACAATCAATGACAACTCTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TGTTTTCAGCAGAATCAGCAAGCAAGCTGTTAGTTACTGTTGAGAT 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 28
27. Match to: CP002889 CP002889.1 Streptococcus phage YMC-2011, complete genome(CP002889) position: 30808-30837, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.18 position: 1195-1224, Strand: -
Score: 28
+ 5' UGUACAACGCAGUAUCAGCAAGCAAGCUGUUAGUUACUGUUUUUGU 3' - <- CRISPR spacer RNA | | |||| ||||||||||||||||||||||||||| | - 3' ATAAAAGTCGTCTTAGTCGTTCGTTCGACAATCAATGACATCTCTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TATTTTCAGCAGAATCAGCAAGCAAGCTGTTAGTTACTGTAGAGAT 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 28
28. Match to: AF115103 AF115103.1 Streptococcus thermophilus bacteriophage Sfi21, complete genome(AF115103) position: 5038-5067, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.18 position: 1195-1224, Strand: -
Score: 28
+ 5' UGUACAACGCAGUAUCAGCAAGCAAGCUGUUAGUUACUGUUUUUGU 3' - <- CRISPR spacer RNA ||| |||| |||||||||||||||||||||||||||| | - 3' ACAAAAGTCGTCTTAGTCGTTCGTTCGACAATCAATGACAACTCTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TGTTTTCAGCAGAATCAGCAAGCAAGCTGTTAGTTACTGTTGAGAT 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 28
29. Match to: AF085222 AF085222.2 Streptococcus thermophilus bacteriophage DT1, complete genome(AF085222) position: 21675-21704, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.12 position: 800-829, Strand: -
Score: 28
+ 5' UGUACAACGGCGUCCCAAUCCUGAUUAAUACUUACUCGGUUUUUGU 3' - <- CRISPR spacer RNA | | ||||||||||||||||||||||||||| || | - 3' GGACAGTTCCGCAGGGTTAGGACTAATTATGAATGTGCTATTTTAG 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CCTGTCAAGGCGTCCCAATCCTGATTAATACTTACACGATAAAATC 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 28
30. Match to: FJ236310 FJ236310.1 Streptococcus phage Abc2, complete genome(FJ236310) position: 21279-21308, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.12 position: 800-829, Strand: -
Score: 28
+ 5' UGUACAACGGCGUCCCAAUCCUGAUUAAUACUUACUCGGUUUUUGU 3' - <- CRISPR spacer RNA | | ||||||||||||||||||||||||||| || | - 3' GGACAGTTCCGCAGGGTTAGGACTAATTATGAATGTGCTATTTTAG 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CCTGTCAAGGCGTCCCAATCCTGATTAATACTTACACGATAAAATC 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 28
31. Match to: AF145054 AF145054.1 Streptococcus thermophilus bacteriophage 7201, complete genome(AF145054) position: 20853-20882, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.32 position: 2119-2148, Strand: -
Score: 27 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTCT)
+ 5' UGUACAACACCAUUAGCAAUCAUUUGUGCCCAUUGAGUGUUUUUGU 3' - <- CRISPR spacer RNA || || |||||| ||||||||||| ||||| || || | - 3' ACCTGAAATGGTAACCGTTAGTAAACGCGGGTGACCCATCTCTTTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TGGACTTTACCATTGGCAATCATTTGCGCCCACTGGGTAGAGAAAT 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 27 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTCT)
32. Match to: AY699705 AY699705.1 Streptococcus thermophilus bacteriophage 2972, complete genome(AY699705) position: 31869-31897, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.14 position: 932-960, Strand: +
Score: 27
+ 5' UGUACAACCGACACAAGAACGUAUGCAAGAGUUCAAGGUUUUUGU 3' - <- CRISPR spacer RNA | || |||||||||||||||||||||| ||||||| - 3' TGGTTTTCGCTGTGTTCTTGCATACGTTCTTAAGTTCCTTCTCTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ACCAAAAGCGACACAAGAACGTATGCAAGAATTCAAGGAAGAGAA 3' - <- [Entrez Nucleotide] |
Score: 27
33. Match to: FJ236310 FJ236310.1 Streptococcus phage Abc2, complete genome(FJ236310) position: 486-515, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.7 position: 470-499, Strand: +
Score: 27 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGC)
+ 5' UGUACAACGCUGGCGAGGAAACGAACAAGGCCUCAACAGUUUUUGU 3' - <- CRISPR spacer RNA || | | || ||||||||||| |||||| | ||||||| | - 3' ACCTTTAACGTCCGCTCCTTTGTTTGTTCAGAAGTTGTCGTCTTTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TGGAAATTGCAGGCGAGGAAACAAACAAGTCTTCAACAGCAGAAAT 3' - <- [Entrez Nucleotide] |
Score: 27 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGC)
34. Match to: EF529515 EF529515.1 Streptococcus phage 858, complete genome(EF529515) position: 24903-24928, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.12 position: 800-829, Strand: -
Score: 27 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTAT)
+ 5' UGUACAACGGCGUCCCAAUCCUGAUUAAUACUUACUCGGUUUUUGU 3' - <- CRISPR spacer RNA | || ||||||||||||||||||||||| | | - 3' GGTCAAAGTCGTAGGGTTAGGACTAATTATGAATGTACTATCTTTG 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CCAGTTTCAGCATCCCAATCCTGATTAATACTTACATGATAGAAAC 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 27 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTAT)
35. Match to: FJ965538 FJ965538.1 Streptococcus phage 5093, complete genome(FJ965538) position: 29144-29172, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.12 position: 800-829, Strand: -
Score: 27 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTAT)
+ 5' UGUACAACGGCGUCCCAAUCCUGAUUAAUACUUACUCGGUUUUUGU 3' - <- CRISPR spacer RNA | ||||||||||| || ||||||||||| || | - 3' GGTCAATTGCGCAGGGTTAGAACCAATTATGAATGTGCTATCTTAG 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CCAGTTAACGCGTCCCAATCTTGGTTAATACTTACACGATAGAATC 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 27 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTAT)
36. Match to: FJ236310 FJ236310.1 Streptococcus phage Abc2, complete genome(FJ236310) position: 27185-27214, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.13 position: 866-895, Strand: +
Score: 26
+ 5' UGUACAACAACACAGCAAGACAAGAGGAUGAUGCUAUGGUUUUUGU 3' - <- CRISPR spacer RNA | ||| ||||||||||||||||||||| |||| | - 3' GTTAAATTTTGCGTCGTTCTGTTCTCCTACTACAATACTGACTTTG 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CAATTTAAAACGCAGCAAGACAAGAGGATGATGTTATGACTGAAAC 3' - <- [Entrez Nucleotide] |
Score: 26
37. Match to: FJ965538 FJ965538.1 Streptococcus phage 5093, complete genome(FJ965538) position: 32498-32527, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.31 position: 2053-2082, Strand: -
Score: 26
+ 5' UGUACAACAAUUUUGCCCCUUCUUUGCCCCUUGACUAGGUUUUUGU 3' - <- CRISPR spacer RNA | || |||||||||||||||||||||||| | ||| - 3' ATTATTTATTAAAACGGGGAAGAAACGGGGAAATAATCTTTTTTTC 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TAATAAATAATTTTGCCCCTTCTTTGCCCCTTTATTAGAAAAAAAG 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 26
38. Match to: CP002889 CP002889.1 Streptococcus phage YMC-2011, complete genome(CP002889) position: 20545-20572, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.15 position: 997-1026, Strand: -
Score: 26
+ 5' UGUACAACACAAUUCUUCAUCCGGUAACUGCUCAAGUGGUUUUUGU 3' - <- CRISPR spacer RNA | | ||||||| |||||||||||||||||||| | | | - 3' GAAGGAATTGTTAAGGAGTAGGCCATTGACGAGTTCGCAATCATAC 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CTTCCTTAACAATTCCTCATCCGGTAACTGCTCAAGCGTTAGTATG 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 26
39. Match to: AF085222 AF085222.2 Streptococcus thermophilus bacteriophage DT1, complete genome(AF085222) position: 24332-24361, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.8 position: 536-565, Strand: +
Score: 26
+ 5' UGUACAACCAUAGAGUGGAAAACUAGAAACAGAUUCAAGUUUUUGU 3' - <- CRISPR spacer RNA | ||| || ||||||||||||||||||||||| | | | - 3' TTCAGGAAGTAGCTTACCTTTTGATCTTTGTCTAAGTTTATTATAA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' AAGTCCTTCATCGAATGGAAAACTAGAAACAGATTCAAATAATATT 3' - <- [Entrez Nucleotide] |
Score: 26
40. Match to: AF145054 AF145054.1 Streptococcus thermophilus bacteriophage 7201, complete genome(AF145054) position: 16349-16378, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.18 position: 1195-1224, Strand: -
Score: 26
+ 5' UGUACAACGCAGUAUCAGCAAGCAAGCUGUUAGUUACUGUUUUUGU 3' - <- CRISPR spacer RNA | | |||| |||||||||||||||||| |||||||| | - 3' ATAAAAGTCGTCTTAGTCGTTCGTTCGACAAACAATGACATCTCTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TATTTTCAGCAGAATCAGCAAGCAAGCTGTTTGTTACTGTAGAGAT 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 26
41. Match to: AF115102 AF115102.1 Streptococcus thermophilus bacteriophage Sfi19, complete genome(AF115102) position: 6603-6632, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.18 position: 1195-1224, Strand: -
Score: 26
+ 5' UGUACAACGCAGUAUCAGCAAGCAAGCUGUUAGUUACUGUUUUUGU 3' - <- CRISPR spacer RNA | | |||| ||||||||||||||||||||| |||||| | - 3' ATAAAAGTCGTCTTAGTCGTTCGTTCGACAATCATTGACAACTCTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TATTTTCAGCAGAATCAGCAAGCAAGCTGTTAGTAACTGTTGAGAT 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 26
42. Match to: FJ226752 FJ226752.1 Streptococcus phage ALQ13.2, complete genome(FJ226752) position: 22372-22401, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.12 position: 800-829, Strand: -
Score: 26
+ 5' UGUACAACGGCGUCCCAAUCCUGAUUAAUACUUACUCGGUUUUUGU 3' - <- CRISPR spacer RNA | | | ||| ||||||||||||||||||||||| || | - 3' GGACGGTTCCGAAGGGTTAGGACTAATTATGAATGTGCTATTTTAG 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CCTGCCAAGGCTTCCCAATCCTGATTAATACTTACACGATAAAATC 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 26
43. Match to: AF085222 AF085222.2 Streptococcus thermophilus bacteriophage DT1, complete genome(AF085222) position: 20837-20866, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.2 position: 140-169, Strand: +
Score: 25 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTTG)
+ 5' UGUACAACAAUGACGAGGAGCUAUUGGCACAACUUACAGUUUUUGU 3' - <- CRISPR spacer RNA || || ||||| || |||||| |||||||| - 3' TATACCAATTGCTACTCCTTGAGAACCGTTTTGAATGTGTTCTTAT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' ATATGGTTAACGATGAGGAACTCTTGGCAAAACTTACACAAGAATA 3' - <- [Entrez Nucleotide] |
Score: 25 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTTG)
44. Match to: FJ965538 FJ965538.1 Streptococcus phage 5093, complete genome(FJ965538) position: 1883-1912, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.16 position: 1063-1092, Strand: +
Score: 25 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
+ 5' UGUACAACAAUUAAGGGCAUAGAAAGGGAGACAACAUGGUUUUUGU 3' - <- CRISPR spacer RNA | ||||| | | ||||||||||||| || |||| | - 3' TTTAACTATTAATCCTCCTATCTTTCCCTCTATTTTACCTTCTTTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' AAATTGATAATTAGGAGGATAGAAAGGGAGATAAAATGGAAGAAAT 3' - <- [Entrez Nucleotide] |
Score: 25 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
45. Match to: FJ236310 FJ236310.1 Streptococcus phage Abc2, complete genome(FJ236310) position: 24723-24750, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.3 position: 206-235, Strand: +
Score: 25 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGC)
+ 5' UGUACAACCGAUUUGACAAUCUGCUGACCACUGUUAUCGUUUUUGU 3' - <- CRISPR spacer RNA | || ||||||||||||| ||||| ||||| || | - 3' ATCGACTGTCTAAACTGTTAGAAGACTGTTGACAGTATCGTCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TAGCTGACAGATTTGACAATCTTCTGACAACTGTCATAGCAGAAAA 3' - <- [Entrez Nucleotide] |
Score: 25 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGC)
46. Match to: AF115102 AF115102.1 Streptococcus thermophilus bacteriophage Sfi19, complete genome(AF115102) position: 1965-1994, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.7 position: 470-499, Strand: +
Score: 25 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGC)
+ 5' UGUACAACGCUGGCGAGGAAACGAACAAGGCCUCAACAGUUUUUGU 3' - <- CRISPR spacer RNA || | | || || ||||||| |||||||| ||||||| | - 3' ACCTTTAACGTCCACTCCTTTTCTTGTTCCAAAGTTGTCGTCTTTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TGGAAATTGCAGGTGAGGAAAAGAACAAGGTTTCAACAGCAGAAAT 3' - <- [Entrez Nucleotide] |
Score: 25 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGC)
47. Match to: FJ236310 FJ236310.1 Streptococcus phage Abc2, complete genome(FJ236310) position: 6540-6565, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.25 position: 1657-1686, Strand: +
Score: 25 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGC)
+ 5' UGUACAACGCUUAGCUGUCCAAUCCACGAACGUGGAUGGUUUUUGU 3' - <- CRISPR spacer RNA | | | ||| ||||||||||||| || ||||| || - 3' CCGACTGCCAAATAGACAGGTTAGGTGATTACACCTGCCGTCTTTC 5' + <- Protospacer Sequence |||||||| |||||||| + 5' GGCTGACGGTTTATCTGTCCAATCCACTAATGTGGACGGCAGAAAG 3' - <- [Entrez Nucleotide] |
Score: 25 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGC)
48. Match to: AF085222 AF085222.2 Streptococcus thermophilus bacteriophage DT1, complete genome(AF085222) position: 7086-7111, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.25 position: 1657-1686, Strand: +
Score: 25 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGC)
+ 5' UGUACAACGCUUAGCUGUCCAAUCCACGAACGUGGAUGGUUUUUGU 3' - <- CRISPR spacer RNA | | | ||| ||||||||||||| || ||||| || - 3' CCGACTGCCAAATAGACAGGTTAGGTGATTACACCTGCCGTCTTTC 5' + <- Protospacer Sequence |||||||| |||||||| + 5' GGCTGACGGTTTATCTGTCCAATCCACTAATGTGGACGGCAGAAAG 3' - <- [Entrez Nucleotide] |
Score: 25 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTGC)
49. Match to: AF115103 AF115103.1 Streptococcus thermophilus bacteriophage Sfi21, complete genome(AF115103) position: 6510-6537, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.25 position: 1657-1686, Strand: +
Score: 25 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
+ 5' UGUACAACGCUUAGCUGUCCAAUCCACGAACGUGGAUGGUUUUUGU 3' - <- CRISPR spacer RNA | | | | |||||| ||||||||||||| | ||||| - 3' CCGTCTGCCAAATCGATAGGTTAGGTGCTTACGGCTACCTTCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' GGCAGACGGTTTAGCTATCCAATCCACGAATGCCGATGGAAGAAAA 3' - <- [Entrez Nucleotide] |
Score: 25 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (TTTCTTC)
50. Match to: CP002889 CP002889.1 Streptococcus phage YMC-2011, complete genome(CP002889) position: 35316-35345, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.32 position: 2119-2148, Strand: -
Score: 24
+ 5' UGUACAACACCAUUAGCAAUCAUUUGUGCCCAUUGAGUGUUUUUGU 3' - <- CRISPR spacer RNA || || |||||| ||||||||||| ||||| ||||| | - 3' ACTTGGAATGGTAACCGTTAGTAAACTCGGGTGACTCATCGCTTTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TGAACCTTACCATTGGCAATCATTTGAGCCCACTGAGTAGCGAAAT 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 24
51. Match to: FJ965538 FJ965538.1 Streptococcus phage 5093, complete genome(FJ965538) position: 7144-7173, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.9 position: 602-631, Strand: +
Score: 24
+ 5' UGUACAACAUAAUGCCGUUGAAUUACACGGCAAGGUCAGUUUUUGU 3' - <- CRISPR spacer RNA | ||||||| || ||| ||||||||||||||| - 3' GTTCCGTCTATTACGTCACCTTGATGTGCCGTTCCAGTGTCCGTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CAAGGCAGATAATGCAGTGGAACTACACGGCAAGGTCACAGGCAAA 3' - <- [Entrez Nucleotide] |
Score: 24
52. Match to: FJ236310 FJ236310.1 Streptococcus phage Abc2, complete genome(FJ236310) position: 5065-5094, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.18 position: 1195-1224, Strand: -
Score: 24
+ 5' UGUACAACGCAGUAUCAGCAAGCAAGCUGUUAGUUACUGUUUUUGU 3' - <- CRISPR spacer RNA | | |||| |||||||||||||||||||| |||||| | - 3' ATAAAAGTCGTCTCAGTCGTTCGTTCGACAATCATTGACAACTCTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TATTTTCAGCAGAGTCAGCAAGCAAGCTGTTAGTAACTGTTGAGAT 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 24
53. Match to: AF085222 AF085222.2 Streptococcus thermophilus bacteriophage DT1, complete genome(AF085222) position: 5611-5640, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.18 position: 1195-1224, Strand: -
Score: 24
+ 5' UGUACAACGCAGUAUCAGCAAGCAAGCUGUUAGUUACUGUUUUUGU 3' - <- CRISPR spacer RNA | | |||| |||||||||||||||||||| |||||| | - 3' ATAAAAGTCGTCTCAGTCGTTCGTTCGACAATCATTGACAACTCTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TATTTTCAGCAGAGTCAGCAAGCAAGCTGTTAGTAACTGTTGAGAT 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 24
54. Match to: AF145054 AF145054.1 Streptococcus thermophilus bacteriophage 7201, complete genome(AF145054) position: 34444-34473, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.12 position: 800-829, Strand: -
Score: 24
+ 5' UGUACAACGGCGUCCCAAUCCUGAUUAAUACUUACUCGGUUUUUGU 3' - <- CRISPR spacer RNA | | |||||||||||| ||||| |||||||| || | | - 3' GGACAGTTCCGCAGGGTTAGAACTAACTATGAATGTGCTATCTTCG 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CCTGTCAAGGCGTCCCAATCTTGATTGATACTTACACGATAGAAGC 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 24
55. Match to: EF529515 EF529515.1 Streptococcus phage 858, complete genome(EF529515) position: 16692-16720, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.21 position: 1393-1422, Strand: +
Score: 24
+ 5' UGUACAACUGCAUCGAGCACGUUCGAGUUUACCGUUUCGUUUUUGU 3' - <- CRISPR spacer RNA | ||| ||||| ||||||||||||||||| ||||| - 3' GAACTTTGTCGTAGTTCGTGCAAGCTCAAATGACAAAGATTTTTTG 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CTTGAAACAGCATCAAGCACGTTCGAGTTTACTGTTTCTAAAAAAC 3' - <- [Entrez Nucleotide] |
Score: 24
56. Match to: AY699705 AY699705.1 Streptococcus thermophilus bacteriophage 2972, complete genome(AY699705) position: 16682-16710, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.21 position: 1393-1422, Strand: +
Score: 24
+ 5' UGUACAACUGCAUCGAGCACGUUCGAGUUUACCGUUUCGUUUUUGU 3' - <- CRISPR spacer RNA | ||| ||||| ||||||||||||||||| ||||| - 3' GAACTTTGTCGTAGTTCGTGCAAGCTCAAATGACAAAGATTTTTTG 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CTTGAAACAGCATCAAGCACGTTCGAGTTTACTGTTTCTAAAAAAC 3' - <- [Entrez Nucleotide] |
Score: 24
57. Match to: NC_009230 NC_009230.1 Burkholderia vietnamiensis G4 plasmid pBVIE01, complete sequence(NC_009230) position: 37983-38011, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.24 position: 1591-1620, Strand: +
Score: 23 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTTC)
+ 5' UGUACAACAAUCAAUACGACAAGAGUUAAAAUGGUCUUGUUUUUGU 3' - <- CRISPR spacer RNA | | ||| |||||||||||| |||| ||| ||| - 3' TTCTTGCGCTAGCAATGCTGTTCTCACTTTTGCCAAAACTTCTTAC 5' + <- Protospacer Sequence |||||||| |||||||| + 5' AAGAACGCGATCGTTACGACAAGAGTGAAAACGGTTTTGAAGAATG 3' - <- [Entrez Nucleotide] |
Score: 23 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTTC)
58. Match to: FJ236310 FJ236310.1 Streptococcus phage Abc2, complete genome(FJ236310) position: 30247-30268, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.15 position: 997-1026, Strand: -
Score: 23 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTGA)
+ 5' UGUACAACACAAUUCUUCAUCCGGUAACUGCUCAAGUGGUUUUUGU 3' - <- CRISPR spacer RNA | | | ||||| |||||||||||||||| - 3' GAGAAAGTTATCGAAGAGTAGACCATTGACGAGTTCACAGTCTTAT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CTCTTTCAATAGCTTCTCATCTGGTAACTGCTCAAGTGTCAGAATA 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 23 , PAM found in forward strands 5' Tag: II-A-WTTCTNN (ATTCTGA)
59. Match to: AF145054 AF145054.1 Streptococcus thermophilus bacteriophage 7201, complete genome(AF145054) position: 33518-33547, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.2 position: 140-169, Strand: +
Score: 22
+ 5' UGUACAACAAUGACGAGGAGCUAUUGGCACAACUUACAGUUUUUGU 3' - <- CRISPR spacer RNA | ||||||||||| || || ||||| |||||| - 3' AATACCATTTACTGCTCCTTGAGAATCGTGTCGAATGTGTTCTCAT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TTATGGTAAATGACGAGGAACTCTTAGCACAGCTTACACAAGAGTA 3' - <- [Entrez Nucleotide] |
Score: 22
60. Match to: AF115103 AF115103.1 Streptococcus thermophilus bacteriophage Sfi21, complete genome(AF115103) position: 20943-20972, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.2 position: 140-169, Strand: +
Score: 22
+ 5' UGUACAACAAUGACGAGGAGCUAUUGGCACAACUUACAGUUUUUGU 3' - <- CRISPR spacer RNA |||||||| || || |||||| |||||||| - 3' GATACCAATTACTGCTGCTTGAGAACCGTTTTGAATGTGTTCTCAT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CTATGGTTAATGACGACGAACTCTTGGCAAAACTTACACAAGAGTA 3' - <- [Entrez Nucleotide] |
Score: 22
61. Match to: AF115102 AF115102.1 Streptococcus thermophilus bacteriophage Sfi19, complete genome(AF115102) position: 22813-22842, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.2 position: 140-169, Strand: +
Score: 22
+ 5' UGUACAACAAUGACGAGGAGCUAUUGGCACAACUUACAGUUUUUGU 3' - <- CRISPR spacer RNA |||||||| || || |||||| |||||||| - 3' GATACCAATTACTGCTGCTTGAGAACCGTTTTGAATGTGTTCTCAT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CTATGGTTAATGACGACGAACTCTTGGCAAAACTTACACAAGAGTA 3' - <- [Entrez Nucleotide] |
Score: 22
62. Match to: FJ236310 FJ236310.1 Streptococcus phage Abc2, complete genome(FJ236310) position: 29604-29632, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.17 position: 1129-1158, Strand: -
Score: 22
+ 5' UGUACAACCGAUAUUUAAAAUCAUUUUCAUAACUUCAUGUUUUUGU 3' - <- CRISPR spacer RNA | || |||||||||||||||| |||||| |||| || - 3' AAATCCGAGCTATAAATTTTAGTAGAAGTATCAAAGTGGAATCTTG 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TTTAGGCTCGATATTTAAAATCATCTTCATAGTTTCACCTTAGAAC 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 22
63. Match to: AF158600 AF158600.2 Streptococcus thermophilus bacteriophage Sfi11, complete genome(AF158600) position: 10160-10188, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.10 position: 668-697, Strand: +
Score: 22
+ 5' UGUACAACGAGCGAGCUCGAAAUAAUCUUAAUUACAAGGUUUUUGU 3' - <- CRISPR spacer RNA ||||||||| ||||||||||||||||| | - 3' TTGATAATCTCGCTCGATTCTTATTAGAATTAATGTTTGATCTCTC 5' + <- Protospacer Sequence |||||||| |||||||| + 5' AACTATTAGAGCGAGCTAAGAATAATCTTAATTACAAACTAGAGAG 3' - <- [Entrez Nucleotide] |
Score: 22
64. Match to: FJ226752 FJ226752.1 Streptococcus phage ALQ13.2, complete genome(FJ226752) position: 15569-15598, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.21 position: 1393-1422, Strand: +
Score: 22
+ 5' UGUACAACUGCAUCGAGCACGUUCGAGUUUACCGUUUCGUUUUUGU 3' - <- CRISPR spacer RNA ||||| || || ||||| |||||||||||||| | - 3' GAGCTCTGACGAAGGTCATGCAAACTCAAATGGCAAAGTTTTTTCC 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CTCGAGACTGCTTCCAGTACGTTTGAGTTTACCGTTTCAAAAAAGG 3' - <- [Entrez Nucleotide] |
Score: 22
65. Match to: X77469 X77469.1 Streptococcus thermophilus bacteriophage SFi18 (and SFi11) viral DNA, orf1 and orf2(X77469) position: 2182-2207, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.14 position: 932-960, Strand: +
Score: 21
+ 5' UGUACAACCGACACAAGAACGUAUGCAAGAGUUCAAGGUUUUUGU 3' - <- CRISPR spacer RNA | || |||||||||||||||||||||| ||| - 3' TGGTTTTCGCTGTGTTCTTGCATACGTTCTTAAG----------- 5' + <- Protospacer Sequence |||||||| + 5' ACCAAAAGCGACACAAGAACGTATGCAAGAATTC----------- 3' - <- [Entrez Nucleotide] |
Score: 21
66. Match to: AF145054 AF145054.1 Streptococcus thermophilus bacteriophage 7201, complete genome(AF145054) position: 3400-3426, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.13 position: 866-895, Strand: +
Score: 20
+ 5' UGUACAACAACACAGCAAGACAAGAGGAUGAUGCUAUGGUUUUUGU 3' - <- CRISPR spacer RNA | |||||| ||||| || ||||||||||| | | - 3' GTTAAATTTTGTGTTGTTCTATTTTCCTACTACGAAATTTACTGTC 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CAATTTAAAACACAACAAGATAAAAGGATGATGCTTTAAATGACAG 3' - <- [Entrez Nucleotide] |
Score: 20
67. Match to: NC_000937 NC_000937.1 Streptococcus thermophilus ST135 plasmid pER35, complete sequence(NC_000937) position: 1050-1079, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.29 position: 1921-1950, Strand: +
Score: 20
+ 5' UGUACAACAAGUAGUUGAUGACCUCUACAAUGGUUUAUGUUUUUGU 3' - <- CRISPR spacer RNA | ||||| |||||||| | ||||| ||||||| | - 3' TTTATTCGTTCAACAACTACTAAATATGTTGCCAAATATAGCTTTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' AAATAAGCAAGTTGTTGATGATTTATACAACGGTTTATATCGAAAA 3' - <- [Entrez Nucleotide] |
Score: 20
68. Match to: AF145054 AF145054.1 Streptococcus thermophilus bacteriophage 7201, complete genome(AF145054) position: 2808-2834, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.13 position: 866-895, Strand: +
Score: 20
+ 5' UGUACAACAACACAGCAAGACAAGAGGAUGAUGCUAUGGUUUUUGU 3' - <- CRISPR spacer RNA | |||||| ||||| || ||||||||||| | | - 3' GTTAAATTTTGTGTTGTTCTATTTTCCTACTACGAAATTTACTGTC 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CAATTTAAAACACAACAAGATAAAAGGATGATGCTTTAAATGACAG 3' - <- [Entrez Nucleotide] |
Score: 20
69. Match to: BL2CG L13696.1 Bacteriophage L2 (from Mycoplasma), complete genome(BL2CG) position: 4514-4542, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.20 position: 1327-1356, Strand: -
Score: 20
+ 5' UGUACAACAAUAAUUUAUGGUAUAGCUUAAUAUCAUUGGUUUUUGU 3' - <- CRISPR spacer RNA | | ||| ||||| | |||||||||||||||| | || || - 3' CAAAGAAATTAGAAAATATCTTATCGAATTATAGTAAAAATAATCA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' GTTTCTTTAATCTTTTATAGAATAGCTTAATATCATTTTTATTAGT 3' - <- [Entrez Nucleotide(Complemented)] |
Score: 20
70. Match to: AF158600 AF158600.2 Streptococcus thermophilus bacteriophage Sfi11, complete genome(AF158600) position: 25194-25223, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.2 position: 140-169, Strand: +
Score: 20
+ 5' UGUACAACAAUGACGAGGAGCUAUUGGCACAACUUACAGUUUUUGU 3' - <- CRISPR spacer RNA |||||||| || || |||||| | |||||| - 3' GATACCAATTACTGCTGCTTGAGAACCGTTTCGAATGTGTTCTCAT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CTATGGTTAATGACGACGAACTCTTGGCAAAGCTTACACAAGAGTA 3' - <- [Entrez Nucleotide] |
Score: 20
71. Match to: GQ452243 GQ452243.1 Enterococcus phage phiEf11, complete genome(GQ452243) position: 25418-25444, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.31 position: 2053-2082, Strand: -
Score: 20
+ 5' UGUACAACAAUUUUGCCCCUUCUUUGCCCCUUGACUAGGUUUUUGU 3' - <- CRISPR spacer RNA | | | ||||||||||| |||||||||| | || | - 3' GAAAATGTTAAAAACGGGGAAAAAACGGGGAAATAATTATCGGAAT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CTTTTACAATTTTTGCCCCTTTTTTGCCCCTTTATTAATAGCCTTA 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 20
72. Match to: U88974 U88974.1 Streptococcus thermophilus temperate bacteriophage O1205, complete genome(U88974) position: 10023-10052, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.15 position: 997-1026, Strand: -
Score: 20
+ 5' UGUACAACACAAUUCUUCAUCCGGUAACUGCUCAAGUGGUUUUUGU 3' - <- CRISPR spacer RNA | ||||||| || || |||||||| || |||| | - 3' GGAACGATTGTTAAGGAGCAGACCATTGACAAGATCACAGTCATAG 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CCTTGCTAACAATTCCTCGTCTGGTAACTGTTCTAGTGTCAGTATC 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 20
73. Match to: AF085222 AF085222.2 Streptococcus thermophilus bacteriophage DT1, complete genome(AF085222) position: 31213-31240, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.15 position: 997-1026, Strand: -
Score: 20
+ 5' UGUACAACACAAUUCUUCAUCCGGUAACUGCUCAAGUGGUUUUUGU 3' - <- CRISPR spacer RNA | |||| ||||| ||||||||||| |||| | - 3' GAGAAAGTTATTAAAGAGTAGACCATTGACGAGATCACAGTTATAT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' CTCTTTCAATAATTTCTCATCTGGTAACTGCTCTAGTGTCAATATA 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 20
74. Match to: DQ386162 DQ386162.1 Streptococcus mutans phage M102, complete genome(DQ386162) position: 9386-9414, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.32 position: 2119-2148, Strand: -
Score: 20
+ 5' UGUACAACACCAUUAGCAAUCAUUUGUGCCCAUUGAGUGUUUUUGU 3' - <- CRISPR spacer RNA || || |||||||| | |||||| | ||||||||| | - 3' ACGTGGAACGGTAATCGATCGTAAACTCTGGTAACTCATGGTTTTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TGCACCTTGCCATTAGCTAGCATTTGAGACCATTGAGTACCAAAAT 3' - <- [Entrez Nucleotide(Complemented)] |
Score: 20
75. Match to: AM749121 AM749121.1 Streptococcus phage M102 complete genome(AM749121) position: 9264-9292, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.32 position: 2119-2148, Strand: -
Score: 20
+ 5' UGUACAACACCAUUAGCAAUCAUUUGUGCCCAUUGAGUGUUUUUGU 3' - <- CRISPR spacer RNA || || |||||||| | |||||| | ||||||||| | - 3' ACGTGGAACGGTAATCGATCGTAAACTCTGGTAACTCATGGTTTTA 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TGCACCTTGCCATTAGCTAGCATTTGAGACCATTGAGTACCAAAAT 3' - <- [Entrez Nucleotide(Complemented)] |
Score: 20
76. Match to: NC_017236 NC_017236.1 Borrelia afzelii PKo plasmid lp28-8, complete sequence(NC_017236) position: 1445-1472, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.19 position: 1261-1290, Strand: +
Score: 20
+ 5' UGUACAACAUAAACUAUGAAAUUUUAUAAUUUUUAAGAGUUUUUGU 3' - <- CRISPR spacer RNA | ||||| ||||| || |||||||| |||| | | | - 3' ATTGTCGTTATTTTATACTGTATAATATTAATAATTGTGGATATTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TAACAGCAATAAAATATGACATATTATAATTATTAACACCTATAAA 3' - <- [Entrez Nucleotide] |
Score: 20
77. Match to: FJ965538 FJ965538.1 Streptococcus phage 5093, complete genome(FJ965538) position: 3998-4024, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.17 position: 1129-1158, Strand: -
Score: 20
+ 5' UGUACAACCGAUAUUUAAAAUCAUUUUCAUAACUUCAUGUUUUUGU 3' - <- CRISPR spacer RNA | | | | |||||||||||||| |||||| |||| || - 3' AAACCCTAGATATAAATTTTAGTAGAAGTATCAAAGTGGAATTTTG 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TTTGGGATCTATATTTAAAATCATCTTCATAGTTTCACCTTAAAAC 3' - <- [Entrez Nucleotide(Reversed)] |
Score: 20
78. Match to: U88974 U88974.1 Streptococcus thermophilus temperate bacteriophage O1205, complete genome(U88974) position: 2918-2946, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.3 position: 206-235, Strand: +
Score: 20
+ 5' UGUACAACCGAUUUGACAAUCUGCUGACCACUGUUAUCGUUUUUGU 3' - <- CRISPR spacer RNA || ||||||| || ||||| ||||||||||| || | - 3' ACCGACTGGCTAAGCTATTAGAAGACTGGTGACAGTATCGTCTGTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TGGCTGACCGATTCGATAATCTTCTGACCACTGTCATAGCAGACAA 3' - <- [Entrez Nucleotide] |
Score: 20
79. Match to: AF020798 AF020798.1
Streptococcus thermophilus bacteriophage lysogeny module, integrase
homolog (int), putative host cell surface-exposed lipoprotein, putative
metallo-proteinase, repressor, Cro-like regulatory protein, and
P1-antirepressor homolog genes, complete cds(AF020798) position: 6382-6410, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.3 position: 206-235, Strand: +
Score: 20
+ 5' UGUACAACCGAUUUGACAAUCUGCUGACCACUGUUAUCGUUUUUGU 3' - <- CRISPR spacer RNA || ||||||| || ||||||||||| ||||| || | - 3' ACCGACTGGCTAAGCTATTAGACGACTGTTGACAGTATCGTCTGTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TGGCTGACCGATTCGATAATCTGCTGACAACTGTCATAGCAGACAA 3' - <- [Entrez Nucleotide] |
Score: 20
80. Match to: AF115103 AF115103.1 Streptococcus thermophilus bacteriophage Sfi21, complete genome(AF115103) position: 28409-28437, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.3 position: 206-235, Strand: +
Score: 20
+ 5' UGUACAACCGAUUUGACAAUCUGCUGACCACUGUUAUCGUUUUUGU 3' - <- CRISPR spacer RNA || ||||||| || ||||||||||| ||||| || | - 3' ACCGACTGGCTAAGCTATTAGACGACTGTTGACAGTATCGTCTGTT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' TGGCTGACCGATTCGATAATCTGCTGACAACTGTCATAGCAGACAA 3' - <- [Entrez Nucleotide] |
Score: 20
81. Match to: AF115103 AF115103.1 Streptococcus thermophilus bacteriophage Sfi21, complete genome(AF115103) position: 20428-20452, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.22 position: 1459-1488, Strand: +
Score: 20
+ 5' UGUACAACUCUAUAUCGAGGUCAACUAACAAUUAUGCUGUUUUUGU 3' - <- CRISPR spacer RNA ||||| ||||||||||||||||||| | | - 3' TTTCTACATCGTATAGATCCAGTTGATTGTTAATACAATATTTTTC 5' + <- Protospacer Sequence |||||||| |||||||| + 5' AAAGATGTAGCATATCTAGGTCAACTAACAATTATGTTATAAAAAG 3' - <- [Entrez Nucleotide] |
Score: 20
82. Match to: AF115102 AF115102.1 Streptococcus thermophilus bacteriophage Sfi19, complete genome(AF115102) position: 22256-22280, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.22 position: 1459-1488, Strand: +
Score: 20
+ 5' UGUACAACUCUAUAUCGAGGUCAACUAACAAUUAUGCUGUUUUUGU 3' - <- CRISPR spacer RNA ||||| ||||||||||||||||||| | | - 3' TTTCTACATCGTATAGATCCAGTTGATTGTTAATACAATATTTTTC 5' + <- Protospacer Sequence |||||||| |||||||| + 5' AAAGATGTAGCATATCTAGGTCAACTAACAATTATGTTATAAAAAG 3' - <- [Entrez Nucleotide] |
Score: 20
83. Match to: AY699705 AY699705.1 Streptococcus thermophilus bacteriophage 2972, complete genome(AY699705) position: 23377-23404, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.22 position: 1459-1488, Strand: +
Score: 20
+ 5' UGUACAACUCUAUAUCGAGGUCAACUAACAAUUAUGCUGUUUUUGU 3' - <- CRISPR spacer RNA | | ||||||| |||| |||||||| ||||| | | | - 3' TTACCATAAGATATATCTCCGGTTGATTGGCAATACAATATTTTCT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' AATGGTATTCTATATAGAGGCCAACTAACCGTTATGTTATAAAAGA 3' - <- [Entrez Nucleotide] |
Score: 20
84. Match to: EF529515 EF529515.1 Streptococcus phage 858, complete genome(EF529515) position: 23423-23450, with: CRISPR No.1 of Streptococcus thermophilus strain DGCC7710 CRISPR1 locus genomic sequence(EF434469) spacer No.22 position: 1459-1488, Strand: +
Score: 20
+ 5' UGUACAACUCUAUAUCGAGGUCAACUAACAAUUAUGCUGUUUUUGU 3' - <- CRISPR spacer RNA | | ||||||| |||| |||||||| ||||| | | | - 3' TTACCATAAGATATATCTCCGGTTGATTGGCAATACAATATTTTCT 5' + <- Protospacer Sequence |||||||| |||||||| + 5' AATGGTATTCTATATAGAGGCCAACTAACCGTTATGTTATAAAAGA 3' - <- [Entrez Nucleotide] |
Score: 20